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java.lang.ObjectDelaySim.DDA
public class DDA
A class describing a reaction-based system to be simulated by the Delay Stochastic Simulation Algorithm where reactions follow the delay-as-duration approach.
Field Summary | |
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Reaction[] |
R
the set of reactions both delayed and non-delayed |
int[] |
x
the simulation state |
Constructor Summary | |
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DDA(Reaction[] reactions_d,
int[] state)
Constructor for a DDA object. |
Method Summary | |
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void |
print()
Print a summary on this system. |
void |
simulate(double t0,
double T)
Execute a DDA simulation for this system starting at time t0 up to time T. |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public Reaction[] R
public int[] x
Constructor Detail |
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public DDA(Reaction[] reactions_d, int[] state)
reactions_d
- the reactions;state
- the initial state vector;Method Detail |
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public void simulate(double t0, double T)
t0
- initial time;T
- stop time;public void print()
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